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NIH3D

Nucleosome - PathogenAR

Created by
kbrowne
Created:
9/22/21
Submitted:
8/16/23
Published:
8/16/23

Select an image below to view

3DPX-016171

Licensing:

CC-BY
243
22
Version 4.01

Category

Biomacromolecules
Biomacromolecules

Collection(s)

Description

This nucleosome model was used in PathogenAR for the Papilloma: The HPV Minichromosome Module.

The 3D model was originally generated for:

Porter SS, Liddle JC, Browne K, Pastrana DV, Garcia BA, Buck CB, Weitzman MD, McBride AA. Histone Modifications in Papillomavirus Virion Minichromosomes. mBio. 2021 Feb 16;12(1):e03274-20. doi: 10.1128/mBio.03274-20. PMID: 33593981.


It was also featured in PaVE 3D.

PDB 1KX5 was used to generate the base model in ChimeraX. H2A is depicted in light green, H2B in dark green, H4 in yellow, and H3 in orange.  A stick representation was added of one H3 tail where acetylation is in magenta, methylation in green and lysine residues in white.

It is UV mapped and includes AO texture maps.

Rendering of nucleosome from ZBrush
H3 AO Map
Acetyle group AO Map
Lysine AO Map
methyl AO Map
H3 tail surface AO Map
H3 backbone AO Map