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NIH3D

Nucleosome - PathogenAR

Created by
kbrowne
Created:
9/22/21
Submitted:
10/8/26
Published:
10/8/26

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Learn more about NIH 3D workflow outputs

3DPX-016171

Licensing:

CC-BY
703
42
Version 6

Category

Biomacromolecules
Biomacromolecules

Collection(s)

Description

This nucleosome model was used in PathogenAR for the Papilloma: The HPV Minichromosome Module.

The 3D model was originally generated for:

Porter SS, Liddle JC, Browne K, Pastrana DV, Garcia BA, Buck CB, Weitzman MD, McBride AA. Histone Modifications in Papillomavirus Virion Minichromosomes. mBio. 2021 Feb 16;12(1):e03274-20. doi: 10.1128/mBio.03274-20. PMID: 33593981.

It was also featured in PaVE 3D.

PDB 1KX5 was used to generate the base model in ChimeraX. H2A is depicted in light green, H2B in dark green, H4 in yellow, and H3 in orange.  A stick representation was added of one H3 tail where acetylation is in magenta, methylation in green and lysine residues in white.

It is UV mapped and includes AO texture maps.